Nykter, M.: search on Z-Library

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1

Effects of thermal and enzymatic treatments and harvesting time on the microbial quality and chemical composition of fibre hemp (Cannabis sativa L.)

Minna Nykter, Hanna-Riitta Kymäläinen, Anne Belinda Thomsen, Hans Lilholt, Hilkka Koponen, Anna-Maija Sjöberg, Anders Thygesen

Journal:

Biomass and Bioenergy

Year:

2008

Language:

english

File:

PDF, 346 KB

english, 2008

2

Cytokeratin-supervised deep learning for automatic recognition of epithelial cells in breast cancers stained for ER, PR, and Ki-67

Valkonen, Mira, Isola, Jorma, Isola, Jorma, Ylinen, Onni, Muhonen, Ville, Saxlin, Anna, Tolonen, Teemu, Nykter, Matti, Ruusuvuori, Pekka

Journal:

IEEE Transactions on Medical Imaging

Year:

2019

Language:

english

File:

PDF, 8 KB

english, 2019

3

Fusion genes and their discovery using high throughput sequencing

Annala, M.J., Parker, B.C., Zhang, W., Nykter, M.

Journal:

Year:

2013

Language:

english

File:

PDF, 837 KB

english, 2013

4

DOT1L-HES6 fusion drives androgen independent growth in prostate cancer

Annala, M., Kivinummi, K., Leinonen, K., Tuominen, J., Zhang, W., Visakorpi, T., Nykter, M.

Journal:

EMBO Molecular Medicine

Year:

2014

Language:

english

File:

PDF, 430 KB

english, 2014

5

Meet a member

Lin, Jake, Kreisberg, Richard, Kallio, Aleksi, Dudley, Aimée M, Nykter, Matti, Shmulevich, Ilya, May, Patrick, Autio, Reija

Journal:

JOM Journal of the Minerals, Metals and Materials Society

Year:

2014

Language:

english

File:

PDF, 359 KB

english, 2014

6

Laminin α5 substrates promote survival, network formation and functional development of human pluripotent stem cell-derived neurons in vitro

Hyysalo, Anu, Ristola, Mervi, Mäkinen, Meeri E.-L., Häyrynen, Sergei, Nykter, Matti, Narkilahti, Susanna

Journal:

Stem Cell Research

Year:

2017

Language:

english

File:

PDF, 4.06 MB

english, 2017

7

Classifieds

Lin, Jake, Kreisberg, Richard, Kallio, Aleksi, Dudley, Aimée M, Nykter, Matti, Shmulevich, Ilya, May, Patrick, Autio, Reija

Journal:

JOM Journal of the Minerals, Metals and Materials Society

Year:

2014

Language:

english

File:

PDF, 318 KB

english, 2014

8

Two mature products of MIR-491 coordinate to suppress key cancer hallmarks in glioblastoma

Li, X, Liu, Y, Granberg, K J, Wang, Q, Moore, L M, Ji, P, Gumin, J, Sulman, E P, Calin, G A, Haapasalo, H, Nykter, M, Shmulevich, I, Fuller, G N, Lang, F F, Zhang, W

Journal:

Year:

2015

Language:

english

File:

PDF, 2.73 MB

english, 2015

9

Integrated Analyses Identify a Master MicroRNA Regulatory Network for the Mesenchymal Subtype in Serous Ovarian Cancer

Yang, Da, Sun, Yan, Hu, Limei, Zheng, Hong, Ji, Ping, Pecot, Chad V., Zhao, Yanrui, Reynolds, Sheila, Cheng, Hanyin, Rupaimoole, Rajesha, Cogdell, David, Nykter, Matti, Broaddus, Russell, Rodriguez-Ag

Journal:

Year:

2013

Language:

english

File:

PDF, 60 KB

english, 2013

10

[IEEE 2017 IEEE International Conference on Computer Vision Workshop (ICCVW) - Venice, Italy (2017.10.22-2017.10.29)] 2017 IEEE International Conference on Computer Vision Workshops (ICCVW) - Dual Structured Convolutional Neural Network with Feature Augmentation for Quantitative Characterization of Tissue Histology

Valkonen, Mira, Kartasalo, Kimmo, Liimatainen, Kaisa, Nykter, Matti, Latonen, Leena, Ruusuvuori, Pekka

Year:

2017

Language:

english

File:

PDF, 888 KB

english, 2017

11

Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression

Turner, Kristen M., Sun, Youting, Ji, Ping, Granberg, Kirsi J., Bernard, Brady, Hu, Limei, Cogdell, David E., Zhou, Xinhui, Yli-Harja, Olli, Nykter, Matti, Shmulevich, Ilya, Yung, W. K. Alfred, Fuller

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

12

Ageing-associated changes in the human DNA methylome: genomic locations and effects on gene expression

Marttila, Saara, Kananen, Laura, Häyrynen, Sergei, Jylhävä, Juulia, Nevalainen, Tapio, Hervonen, Antti, Jylhä, Marja, Nykter, Matti, Hurme, Mikko

Journal:

Year:

2015

Language:

english

File:

PDF, 929 KB

english, 2015

13

Twist predicts poor outcome of patients with astrocytic glioma

Nordfors, Kristiina, Haapasalo, Joonas, Mäkelä, Katri, Granberg, Kirsi J, Nykter, Matti, Korja, Miikka, Paavonen, Timo, Haapasalo, Hannu, Soini, Ylermi

Journal:

Journal of Clinical Pathology

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

14

Comparative analysis of osteoblast gene expression profiles and Runx2 genomic occupancy of mouse and human osteoblasts in vitro

Tarkkonen, Kati, Hieta, Reija, Kytölä, Ville, Nykter, Matti, Kiviranta, Riku

Journal:

Year:

2017

Language:

english

File:

PDF, 1.77 MB

english, 2017

15

Evaluation of Commercial Circulating Tumor DNA Test in Metastatic Prostate Cancer

Taavitsainen, Sinja, Annala, Matti, Ledet, Elisa, Beja, Kevin, Miller, Patrick J., Moses, Marcus, Nykter, Matti, Chi, Kim N., Sartor, Oliver, Wyatt, Alexander W.

Journal:

JCO Precision Oncology

Year:

2019

Language:

english

File:

PDF, 885 KB

english, 2019

16

Biological Information as Set-Based Complexity

Galas, D.J., Nykter, M., Carter, G.W., Price, N.D., Shmulevich, I.

Journal:

IEEE Transactions on Information Theory

Year:

2010

Language:

english

File:

PDF, 421 KB

english, 2010

17

Virtual cell imaging: A review on simulation methods employed in image cytometry

Ulman, Vladimír, Svoboda, David, Nykter, Matti, Kozubek, Michal, Ruusuvuori, Pekka

Journal:

Cytometry Part A

Year:

2016

Language:

english

File:

PDF, 548 KB

english, 2016

18

Constitutively active androgen receptor splice variants AR-V3, AR-V7 and AR-V9 are co-expressed in castration-resistant prostate cancer metastases

Kallio, Heini M. L., Hieta, Reija, Latonen, Leena, Brofeldt, Anniina, Annala, Matti, Kivinummi, Kati, Tammela, Teuvo L., Nykter, Matti, Isaacs, William B., Lilja, Hans G., Bova, G. Steven, Visakorpi,

Journal:

British Journal of Cancer

Year:

2018

Language:

english

File:

PDF, 1.08 MB

english, 2018

19

Expression Analysis of Platinum Sensitive and Resistant Epithelial Ovarian Cancer Patient Samples Reveals New Candidates for Targeted Therapies

Veskimäe, K, Scaravilli, M, Niininen, W, Karvonen, H, Jaatinen, S, Nykter, M, Visakorpi, T, Mäenpää, J, Ungureanu, D, Staff, S

Journal:

Translational Oncology

Year:

2018

Language:

english

File:

PDF, 1.66 MB

english, 2018

20

Comparison of iTRAQ and SWATH in a clinical study with multiple time points

Jylhä, Antti, Nättinen, Janika, Aapola, Ulla, Mikhailova, Alexandra, Nykter, Matti, Zhou, Lei, Beuerman, Roger, Uusitalo, Hannu

Journal:

Clinical Proteomics

Year:

2018

Language:

english

File:

PDF, 1.59 MB

english, 2018

21

Differential gene expression in non-malignant tumour microenvironment is associated with outcome in follicular lymphoma patients treated with rituximab and CHOP

Antti Harjunpää, Minna Taskinen, Matti Nykter, Marja-Liisa Karjalainen-Lindsberg, Heidi Nyman, Outi Monni, Samuli Hemmer, Olli Yli-Harja, Sampsa Hautaniemi, Seppo Meri, Sirpa Leppä

Journal:

British Journal of Haematology

Year:

2006

Language:

english

File:

PDF, 715 KB

english, 2006

22

Critical Networks Exhibit Maximal Information Diversity in Structure-Dynamics Relationships

Nykter, Matti, Price, Nathan D., Larjo, Antti, Aho, Tommi, Kauffman, Stuart A., Yli-Harja, Olli, Shmulevich, Ilya

Journal:

Physical Review Letters

Year:

2008

Language:

english

File:

PDF, 213 KB

english, 2008

23

Microarray analysis of differentially expressed genes in ovarian and fallopian tube epithelium from risk-reducing salpingo-oophorectomies

Veskimäe, Kristina, Staff, Synnöve, Tabaro, Francesco, Nykter, Matti, Isola, Jorma, Mäenpää, Johanna

Journal:

Genes, Chromosomes and Cancer

Year:

2015

Language:

english

File:

PDF, 346 KB

english, 2015

24

Computational characterization of suppressive immune microenvironments in glioblastoma

Luoto, Suvi, Hermelo, Ismaïl, Vuorinen, Elisa M, Hannus, Paavo, Kesseli, Juha, Nykter, Matti, Granberg, Kirsi J

Journal:

Cancer Research

Year:

2018

Language:

english

File:

PDF, 1.71 MB

english, 2018

25

Essential physiological differences characterise short- and long-lived strains of Drosophila melanogaster

Gubina, Nina, Naudi, Alba, Stefanatos, Rhoda, Jove, Mariona, Scialo, Filippo, Fernandez-Ayala, Daniel J, Rantapero, Tommi, Yurkevych, Ihor, Portero-Otin, Manuel, Nykter, Matti, Lushchak, Oleh, Navas,

Journal:

The Journals of Gerontology Series A Biological Sciences and Medical Sciences

Year:

2018

Language:

english

File:

PDF, 1.21 MB

english, 2018

26

Genomic alterations in circulating tumor DNA (ctDNA) are associated with clinical outcomes in treatment-naive metastatic castration-resistant prostate cancer (mCRPC) patients commencing androgen receptor (AR)-targeted therapy

Wyatt, A.W., Annala, M., Beja, K., Parimi, S., Vandekerkhove, G., Warner, E., Zulfiqar, M., Finch, D., Oja, C., Vergidis, J., Nykter, M., Gleave, M.E., Chi, K.

Journal:

Annals of Oncology

Year:

2016

Language:

english

File:

PDF, 40 KB

english, 2016

27

Overexpression of SNORD114-3 marks acute promyelocytic leukemia

Liuksiala, T, Teittinen, K J, Granberg, K, Heinäniemi, M, Annala, M, Mäki, M, Nykter, M, Lohi, O

Journal:

Year:

2014

Language:

english

File:

PDF, 442 KB

english, 2014

28

Neoadjuvant hormonal therapies induce the expression of AR transcript variants

Tammela, T., Kallio, H., Annala, M., Brofeldt, A., Hieta, R., Kivinummi, K., Nykter, M., Lilja, H., Bova, G., Visakorpi, T.

Journal:

European Urology Supplements

Year:

2017

Language:

english

File:

PDF, 216 KB

english, 2017

29

The expression of AURKA is androgen regulated in castration-resistant prostate cancer

Kivinummi, Kati, Urbanucci, Alfonso, Leinonen, Katri, Tammela, Teuvo L. J., Annala, Matti, Isaacs, William B., Bova, G. Steven, Nykter, Matti, Visakorpi, Tapio

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.64 MB

english, 2017

30

Data-driven characterization of molecular phenotypes across heterogeneous sample collections

Mehtonen, Juha, Pölönen, Petri, Häyrynen, Sergei, Dufva, Olli, Lin, Jake, Liuksiala, Thomas, Granberg, Kirsi, Lohi, Olli, Hautamäki, Ville, Nykter, Matti, Heinäniemi, Merja

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 4.90 MB

english, 2019

31

A Data Integration Framework for Prediction of Transcription Factor Targets : A BCL6 Case Study

Matti Nykter, Harri Lähdesmäki, Alistair Rust, Vesteinn Thorsson, Ilya Shmulevich

Journal:

Annals of the New York Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 375 KB

english, 2009

32

Karyotypically abnormal human ESCs are sensitive to HDAC inhibitors and show altered regulation of genes linked to cancers and neurological diseases

Lund, Riikka J., Emani, Maheswara Reddy, Barbaric, Ivana, Kivinen, Virpi, Jones, Mark, Baker, Duncan, Gokhale, Paul, Nykter, Matti, Lahesmaa, Riitta, Andrews, Peter W.

Journal:

Stem Cell Research

Year:

2013

Language:

english

File:

PDF, 2.28 MB

english, 2013

33

MiR-1247-5p is overexpressed in castration resistant prostate cancer and targets MYCBP2

Scaravilli, Mauro, Porkka, Kati P., Brofeldt, Anniina, Annala, Matti, Tammela, Teuvo LJ., Jenster, Guido W., Nykter, Matti, Visakorpi, Tapio

Journal:

Year:

2015

Language:

english

File:

PDF, 387 KB

english, 2015

34

Assessment of PARP protein expression in epithelial ovarian cancer by ELISA pharmacodynamic assay and immunohistochemistry

Veskimäe, K., Staff, S., Grönholm, A., Pesu, M., Laaksonen, M., Nykter, M., Isola, J., Mäenpää, J.

Journal:

Year:

2016

Language:

english

File:

PDF, 929 KB

english, 2016

35

Inherited DNA Repair Gene Mutations in Men with Lethal Prostate Cancer

Rantapero, Tommi, Wahlfors, Tiina, KÃ¤hler, Anna, Hultman, Christina, Lindberg, Johan, Tammela, Teuvo LJ, Nykter, Matti, Schleutker, Johanna, Wiklund, Fredrik

Journal:

Year:

2020

Language:

english

File:

PDF, 929 KB

english, 2020

36

Unsupervised Analysis Uncovers Changes in Histopathologic Diagnosis in Supervised Genomic Studies

Nykter, M., Hunt, K. K., Pollock, R. E., El-Naggar, A. K., Taylor, E., Shmulevich, I., Yli-Harja, O., Zhang, W.

Journal:

Technology in Cancer Research & Treatment

Year:

2006

Language:

english

File:

PDF, 1.13 MB

english, 2006

37

Construction of therapeutically relevant human prostate epithelial fate map by utilising miRNA and mRNA microarray expression data

Rane, Jayant K, Ylipää, Antti, Adamson, Rachel, Mann, Vincent M, Simms, Matthew S, Collins, Anne T, Visakorpi, Tapio, Nykter, Matti, Maitland, Norman J

Journal:

British Journal of Cancer

Year:

2015

Language:

english

File:

PDF, 574 KB

english, 2015

38

Epigenetically altered miR-193b targets cyclin D1 in prostate cancer

Kaukoniemi, Kirsi M., Rauhala, Hanna E., Scaravilli, Mauro, Latonen, Leena, Annala, Matti, Vessella, Robert L., Nykter, Matti, Tammela, Teuvo L. J., Visakorpi, Tapio

Journal:

Cancer Medicine

Year:

2015

Language:

english

File:

PDF, 491 KB

english, 2015

39

Discovery of an androgen responsive long non-coding RNA that associates with progression of ERG overexpressing prostate cancers

Kohvakka, A., Shcherban, A., Kivinummi, K., Latonen, L., Annala, M., Urbanucci, A., Nykter, M., Visakorpi, T.

Journal:

European Urology Supplements

Year:

2018

File:

PDF, 91 KB

2018

40

Simulation of microarray data with realistic characteristics

Matti Nykter, Tommi Aho, Miika Ahdesmäki, Pekka Ruusuvuori, Antti Lehmussola, Olli Yli-Harja

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 2.60 MB

english, 2006

41

Loss of PTEN Is Associated with Aggressive Behavior in ERG-Positive Prostate Cancer

Leinonen, K. A., Saramaki, O. R., Furusato, B., Kimura, T., Takahashi, H., Egawa, S., Suzuki, H., Keiger, K., Ho Hahm, S., Isaacs, W. B., Tolonen, T. T., Stenman, U.-H., Tammela, T. L. J., Nykter, M.,

Journal:

Cancer Epidemiology Biomarkers & Prevention

Year:

2013

Language:

english

File:

PDF, 608 KB

english, 2013

42

Characterization of aberrant pathways across human cancers

Antti Ylipää,Olli Yli-Harja,Wei Zhang,Matti Nykter

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 3.94 MB

english, 2013

43

[IEEE 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Lyon, France (2007.08.22-2007.08.26)] 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Microarray Simulator as Educational Tool

Ruusuvuori, Pekka, Nykter, Matti, Makiraatikka, Eeva, Lehmussola, Antti, Korpelainen, Tomi, Erkkila, Timo, Yli-Harja, Olli

Year:

2007

Language:

english

File:

PDF, 223 KB

english, 2007

44

Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas

Lehtinen, Birgitta, Raita, Annina, Kesseli, Juha, Annala, Matti, Nordfors, Kristiina, Yli-Harja, Olli, Zhang, Wei, Visakorpi, Tapio, Nykter, Matti, Haapasalo, Hannu, Granberg, Kirsi J.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.92 MB

english, 2017

45

1074 Microseminoprotein-beta expression in different stages of prostate cancer

Sjöblom, L, Saramäki, O., Annala, M., Leinonen, K., Nättinen, J., Tolonen, T., Wahlfors, T., Nykter, M., Bova, G., Schleutker, J., Tammela, T., Lilja, H., Visakorpi, T.

Journal:

European Urology Supplements

Year:

2016

Language:

english

File:

PDF, 106 KB

english, 2016

46

Gene-pair expression signatures reveal lineage control

Heinäniemi, Merja, Nykter, Matti, Kramer, Roger, Wienecke-Baldacchino, Anke, Sinkkonen, Lasse, Zhou, Joseph Xu, Kreisberg, Richard, Kauffman, Stuart A, Huang, Sui, Shmulevich, Ilya

Journal:

Year:

2013

Language:

english

File:

PDF, 2.44 MB

english, 2013

47

Overexpression of PTP4A3 in ETV6-RUNX1 acute lymphoblastic leukemia

Grönroos, Toni, Teppo, Susanna, Mehtonen, Juha, Laukkanen, Saara, Liuksiala, Thomas, Nykter, Matti, Heinäniemi, Merja, Lohi, Olli

Journal:

Leukemia Research

Year:

2017

Language:

english

File:

PDF, 1.51 MB

english, 2017

48

Analysis of spatial heterogeneity in normal epithelium and preneoplastic alterations in mouse prostate tumor models

Valkonen, Mira, Ruusuvuori, Pekka, Kartasalo, Kimmo, Nykter, Matti, Visakorpi, Tapio, Latonen, Leena

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.32 MB

english, 2017

49

Information Diversity in Structure and Dynamics of Simulated Neuronal Networks

Mäki-Marttunen, Tuomo, Aćimović, Jugoslava, Nykter, Matti, Kesseli, Juha, Ruohonen, Keijo, Yli-Harja, Olli, Linne, Marja-Leena

Journal:

Frontiers in Computational Neuroscience

Year:

2011

Language:

english

File:

PDF, 6.81 MB

english, 2011

50

Frequent mutation of the FOXA1 untranslated region in prostate cancer

Annala, Matti, Taavitsainen, Sinja, Vandekerkhove, Gillian, Bacon, Jack V. W., Beja, Kevin, Chi, Kim N., Nykter, Matti, Wyatt, Alexander W.

Journal:

Communications Biology

Year:

2018

Language:

english

File:

PDF, 800 KB

english, 2018

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